the war on error – part 2

We need to get serious about the War on Error. If we are making mistakes, the sooner they are corrected the better.

“Don’t get greedy.”

My gloved hands were busy handling a pipet inside a laminar flow hood while learning to transfer tissue culture cells. This is a side of scientific research that is not well appreciated. Generations of mentors have worked one on one with peers and students to share techniques and even more importantly why things are done a certain way. (Research is labor intensive.)

I thought avoiding greed was good advice in general though (greediness in regular expressions REGEX being the exception).

After the cells were comfortable in their new flasks there was time for the explanation. To keep cells growing in culture, you need to use an enzyme preparation to break their grip on the culture flask, then transfer (split) them into new flasks to give them room to grow. I noticed that the procedure left a fair amount of suspension behind and had asked if I should go back and try to recover it. The cells are in a fragile state after the enzyme treatment and “getting greedy” would actually result in net cell loss because of the extra time involved.

Greed and selfishness seem to be closely related. Some reading:

‘Selfish’ Giving: Does It Count If You Get In Return?

http://www.npr.org/templates/story/story.php?storyId=121718372

[Yesterday I suggested that there is hope that corporations should be expected to act as responsible citizens. Corporate generosity is an example in the link above.]

Aggression vs Altruism

http://www.springerlink.com/content/u028747670201513/

Genes may actually encode for altruism? Now there is food for thought! I have remarked several times that although people like to quote “survival of the fittest” to describe evolution (and excuse terrible behavior), probably the beatitude “Blessed are the meek, for they shall inherit the earth,” is more accurate.

One of the things I have learned as a scientist is not only to list what assumptions you make but to question the validity of those assumptions as well. Much of what makes our society work is that there has been an assumption that most of the citizens are honest and have good intentions. There will be a sociopaths — we all know people who will seek ways to cheat even if doing the honest thing is actually easier. There are humane ways to protect the rest of society from them. Unfortunately we have allowed the creation of entities that have rights of citizens. Legislation isn’t very effective because (a) government is essentially “outgunned” by the resources available find and even create loopholes for financial benefit and (b) the reason for their existance is to maximize financial benefit.

Maybe selfishness and greed have to be promoted actively in real people because they go against our nature? However if the marketing of greed is successful, it will invalidate one of the basic assmuptions about how our society works.

Then there is the question of who promotes greed and why. How did we in the USA get to where we consume a much higher proportion of non-renewable resources than our share?

Greed may be accidental, a result of ignorance or short sightedness. Encouraging people to learn about how things work can prevent this accidental greed while giving pleasure in appreciating the complexities of our society as well as the natural world. A net gain for all, but not good for those who rely on making things complicated to promote unquestioning consumption.

Institutions can be accidentally greedy too. For example, the US Postal Service has been removing drop boxes in urban and suburban areas for cost savings. There are a number of elderly and disabled people in my neighborhood. They were assured that the mail carrier would pick up their mail. However, when I actually checked, only rural mail carriers are required to pick up outgoing mail. In town where the carrier goes around on foot, it is not required. It appears that what happened is that the individual mail carriers, bless them, took on the responsibility on their own, altruistic behavior.

Now, you would think that walking a bit further to depost your mail would be good exercise, but for some of us that is not the case. If the weather is bad or we are having a bad day, a lot of us go to our cars and turn the key in the ignition. So, the Postal Service technically saved money and made their carriers work harder, but how much did they contribute to increasing greenhouse gas emissions?

If there are any engineers or scientists working for the government who are not totally demoralized after a couple generations of abuse from the “small government” people, they may be able to give an definitive answer given some resources.

If it actually makes better sense environmentally for the Postal Service to encourage their carriers to pick up mail, they should be given bonuses for reducing greenhouse emissions and saving energy. And if that means hiring more carriers, heaven knows we have a lot of people looking for jobs.

That would probably require cooperation between agencies though, which leads to questioning the assumption that there are responsible adults in charge, but that is a topic for another day.

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the war on error – part 1

I have been thinking of writing this series for some time. Our former president was very close to the heart of the problem, if he had only dropped the first letter from the name of his famous war.

This will probably offend some good friends but this recent book by Dr. Guy Offit NPR interview here I think is an account of things gone too far. It also shows that given enough time, work published in error can be corrected by reputable journals and honest researchers.

I entered the PhD program in analytical chemistry at a major US university in early 1970. That was the Kent State Semester, for younger folks, probably the last time our country was close to revolution (personal opinion). At that time, noted professors were lamenting the fact that very few of their graduates ever published again after their PhD thesis. They all had good relations with major corporations, so they knew where most of those former students found jobs.

Scientists and artists could hold their heads high though. Intellectual freedom was a real thing, and their exchanges with Eastern Block countries probably started the thaw in the cold war. For someone like me who grew up with Senator McCarthy’s Red Scare and those “duck and cover” drills at school (thanks Lorraine for the reminder) supposedly to deal with nuclear war, you could easily see that people from Communist countries didn’t have horns, forked tongues, nor breathe fire. They were part of the scientific community, often maintaining their professional integrity at great personal risk.

Flash forward to the 1980s — a noted scientist tells me “In Russia I couldn’t publish because of politics, here in USA I can’t publish because of business.”

This gets to a very big error. It started with political campaigns that pushed the idea that the private sector could do everything better (unproved and in my personal observations the opposite was often true). Scientific discoveries could be proprietary information, not to be shared with the community. Understand that there are instances in the history of science when nations at war with each other recognized achievements by awarding prizes to individuals in countries on the other side!

What is this big error? Namely that the natural world is not subservient to politics and economics. Actually it is quite the opposite, as many of us in the mid-Atlantic region were reminded this weekend by a record breaking snow storm. What has traditionally kept scientists honest is that when you try to cheat, you actually cheat yourself — and others are encouraged to try to repeat your published work.

For profit organizations not only feel they “own” discoveries about the natural world (and can suppress publication to the scientific community), they even have gone so far as to patent genomes. Yes, they can patent your very own DNA, think about that the next time you need to have a biopsy.

Much of the pharmaceutical industry’s work (aside from marketing) consists of taking a molecule that mimics a natural substance, or taking a known natural drug, and altering it enough to allow it to be patented, hopefully not to the extent that it totally loses effectiveness nor kills patients outright. If you look at those leaflets that come inside medication boxes, they appear to be loaded with information, but usually leave some very basic questions unanswered. I remember this from college, when you want to cover up that there is an issue or that you just don’t know, you spew every blessed thing you can remember even remotely related — a snow job. (yeah, managed to tie that in with the weather) They aren’t doing things this way just to be evil (sorry Google) but that is the way we citizens have allowed the law and regulatory structure to deteriorate.

The autism and vaccines case may be unusual, there was one report which suggested that the author of the study had financial ties with lawyers involved in litigation against vaccine manufacturers. It was probably media hype that made the difference rather than direct financial gain. Actually, vaccines are the least profitable sector of the pharmaceutical industry, that is why your flu shot was financied by the Federal Government. This is a very good example of why relying on the private sector and the market is not always a good idea.

I encourage you to do an experiment of your own, all you need is to run a blog. Publish a post that mentions a major name brand medication and say something about generics. Count how many comments you get. If you are running your blog responsibly, you will hold comments for moderation (comment spam is a big problem) and require a valid email address be submitted. Then send a message to that email address. Yes, I have done this, and no, there is never a reply no matter how polite you are. The marketers are in the blogosphere.

Recently things have gone further, corporations in the USA now have rights normally accorded only to real live citizens. This means that marketing and media hype can be even louder.

There is hope though. We just have to acknowledge there has been a big error in granting non-human financial inventions the rights of citizens without them being expected to bear the responsibilities of citizens. For instance, making a good faith effort to pay the taxes required to run our country is a good start. Perhaps the CEOs should do some serious jail time (and not in white collar prisons) if a product kills people. I think that would cut down on so called “frivilous litigation” quite a bit as well. A good citizen seeks out the spirit of the laws of the land and abides by that rather than trying to profit from loopholes.

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morning after

I am up and having a buckwheat pancake and sausage sandwich made from yesterday’s leftovers with the morning pot of tea. It is just after 6 am, still dark out.

I just heard on the radio that the New Orleans Saints won the Super Bowl last night. I got up to give Bode his pill at 8 PM and checked email but didn’t go on the computer when he needed to go out after midnight. Guess I am not that rabid a sports fan, at least for organized professional sports.

Sounds like there are still some closures today from Saturday’s snow storm.

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snow pictures

Decided not to be a Facebook snob, so added photos here on my blog too.

5:30 am back deck

5:29 am - the side yard

7:08 am - view from deck at first light

7:09 am - spruces and trees viewed from back deck.

7:10 am - neighbors car axle deep in snow

7:11 am - looking around before shoveling. Bode is peeking out, he is curious too.

7:20 am - Bode on front walk, shoulder deep snow.

7:28 am - Bode, my snow dog, watches as Cookie clears the snow in front of Harry's house.

7:30 am - Cookie and snow blower

7:28 am - looking north on State Route 128

7:28 am - Bode at the end of the shoveled walk, watching our neighbor Cookie.

7:30 - looking across 5th Avenue toward Kim's house.

7:30 am - the side yard from out front

7:30 am - snow on John's spruce tree branches where the overhang the fence.

7:41 am - side yard shoveled to allow Bode out to take care of business

7:30 am - side yard shoveled to let Bode out

8:25 am - view from kitchen window -- snow has completely loaded the raspberry canes.

8:25 am - view out kitchen window toward the cliff out back.

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up early again

Bode needed to go out about an hour ago, but I was up anyway, so gave him a bit to eat and made a pot of tea. He is snoozing away. Decided to go onto Facebook, the current refuge for insomniacs. I just now rinsed the pinto beans that have been soaking and put them on to boil. I am planning to make some chili with the Spaggy’s Madness Sale ground round I bought yesterday. Decided to give this blog some attention.

Yesterday morning I got up early too, ended up putting together a meat loaf to cook at my parents house. It was a lot easier to put the assembled ingredients into a plastic bowl and shape it after I got there than to carry a hot finished product in the car and probably have to warm it up at lunch time anyway.

My dad went to the hospital to have his blood work done while mother and I visited and I put the meat and potatoes in the oven to bake for lunch. It was cold in the morning but turned out to be a beautiful day. My dad returned and grabbed some peanut butter on crackers to chase his pills, then went out again for a haircut. Several kind people have offered to come to the house to cut his hair, like for my mom, but going to the shop is a special treat for him. We put the oven on low and had a nice lunch when he returned.

He found a pair of suspenders while going through things and has been wearing them. He looks pretty good in them! Both he and my mom seemed to be in good spirits, think the sunshine helped.

We are expecting a major winter storm to start later today, so was happy to get some errands done as well as visiting. My major flub-up was to grab some reduced fat sour cream instead of the real stuff when I stopped for groceries on the way home. Guar gum is no substitute nutritionally nor financially for butterfat. I shudder to think what is in the fat-free sour cream, even with two degrees in chemistry I just don’t want to look.

The fat is reduced 40% and it appears the compensation was to add a thickener, so if I use three tablespoons instead of two on my baked potato or add some butter to a recipe, should be OK. Feel dumb though, I know that I often end up grabbing the thing beside what I reach for when tired.

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